I love making these whole wheat blueberry muffins because they feel like a cozy hug in the morning. They’re a great way to enjoy something sweet and a little healthy at the same time. I hope you have fun baking them and enjoy the fresh blueberry bursts in every bite!
Most of the ingredients in this recipe are pretty common, but if you don’t usually keep whole wheat flour at home, you might want to pick some up at the store. Also, fresh or frozen blueberries work well, so if fresh ones aren’t in season, frozen is a perfect choice. Honey is used instead of sugar here, which adds a natural sweetness and keeps the muffins moist.

Ingredients for Whole Wheat Blueberry Muffins Recipe
Whole wheat flour: This is a healthier alternative to regular flour, giving the muffins a nutty flavor and extra fiber.
Blueberries: Fresh or frozen blueberries add juicy bursts of sweetness and a lovely color.
Milk: Helps keep the muffins moist and tender.
Honey: A natural sweetener that adds flavor and moisture.
Vegetable oil: Keeps the muffins soft and adds richness without a strong flavor.
Eggs: Bind the ingredients together and help the muffins rise.
Baking powder: A leavening agent that makes the muffins light and fluffy.
Vanilla extract: Adds a warm, sweet aroma and flavor.
Salt: Enhances all the other flavors in the muffins.
Technique Tip for Baking
One of the most important steps in this Whole Wheat Blueberry Muffins Recipe is mixing the wet and dry ingredients just right. When you pour the wet ingredients into the dry ones, you want to stir until they’re just combined. That means you mix until you don’t see any more dry flour, but you don’t want to keep stirring after that. Here’s how to do it:
- Pour the wet mixture slowly into the bowl with the dry ingredients.
- Use a spoon or spatula to gently stir everything together.
- Stop mixing as soon as the flour disappears and the batter looks a little lumpy.
Why does this matter? If you stir too much, the muffins can turn out tough or dense because the gluten in the whole wheat flour gets overworked. When you stop mixing early, the muffins stay soft and fluffy, which makes them way more enjoyable to eat.
I remember the first time I made these muffins, I got excited and kept stirring until the batter was super smooth. The muffins came out kind of chewy, and I wasn’t happy with that. After that, I learned to stop mixing early, and the difference was amazing! Also, folding in the blueberries gently at the end helps keep them from breaking and turning the batter purple, which looks a little messy but still tastes great.
So, next time you’re mixing muffin batter, think of it like giving it just enough attention—not too much, not too little. It’s a small trick that makes a big difference in how your muffins turn out!
Suggested Side Dishes
Alternative Ingredients
whole wheat flour - Substitute with all-purpose flour: All-purpose flour can be used for a lighter texture, though it will lack the whole grain benefits of whole wheat.
whole wheat flour - Substitute with oat flour: Oat flour provides a similar nutritional profile and adds a slightly nutty flavor.
blueberries - Substitute with raspberries: Raspberries offer a tart flavor and similar texture, though they may be slightly more delicate.
blueberries - Substitute with dried cranberries: Dried cranberries add a chewy texture and sweet-tart flavor, though they will not provide the same juiciness.
milk - Substitute with almond milk: Almond milk is a dairy-free alternative that maintains moisture with a slightly nutty taste.
milk - Substitute with buttermilk: Buttermilk adds a tangy flavor and helps with leavening, making muffins tender.
honey - Substitute with maple syrup: Maple syrup provides a similar sweetness and adds a distinct flavor.
honey - Substitute with agave nectar: Agave nectar is a vegan alternative with a similar sweetness level.
vegetable oil - Substitute with coconut oil: Coconut oil adds a subtle coconut flavor and is a healthier fat option.
vegetable oil - Substitute with applesauce: Applesauce reduces fat content and adds moisture, though it may slightly alter the texture.
eggs - Substitute with flax eggs: Flax eggs are a vegan alternative that provide binding and moisture.
eggs - Substitute with mashed banana: Mashed banana adds moisture and a hint of banana flavor, suitable for binding.
baking powder - Substitute with baking soda and cream of tartar: Combine ¼ teaspoon baking soda with ½ teaspoon cream of tartar for each teaspoon of baking powder needed.
vanilla extract - Substitute with almond extract: Almond extract provides a different but pleasant flavor profile.
vanilla extract - Substitute with maple extract: Maple extract offers a sweet, rich flavor that complements muffins well.
salt - Substitute with sea salt: Sea salt can be used for a slightly different mineral content and flavor profile.
salt - Substitute with kosher salt: Kosher salt has larger grains and a milder flavor, which can be used in the same quantity.
Alternative Recipes to Try
How to Store or Freeze These Muffins
Allow the muffins to cool completely on a wire rack before storing. This prevents condensation from forming, which can make them soggy.
For short-term storage, place the muffins in an airtight container. Line the bottom with a paper towel, add the muffins, and cover them with another paper towel to absorb any excess moisture.
Keep the container at room temperature for up to 3 days. If you live in a humid climate, consider storing them in the refrigerator to extend their freshness.
For longer storage, wrap each muffin individually in plastic wrap or aluminum foil. This helps maintain their moisture and flavor.
Place the wrapped muffins in a freezer-safe bag or container. Label with the date to keep track of their freshness.
Store the muffins in the freezer for up to 3 months. This ensures they retain their delightful taste and texture.
To enjoy a frozen muffin, remove it from the freezer and let it thaw at room temperature for about an hour. For a quicker option, microwave on a low setting for 20-30 seconds.
For a freshly baked feel, preheat your oven to 350°F (175°C) and warm the thawed muffins for 5-10 minutes. This revives their delightful aroma and taste.
How to Reheat Leftovers
Preheat your oven to 350°F (175°C). Place the muffins on a baking sheet and cover them loosely with aluminum foil to prevent them from drying out. Warm them in the oven for about 10 minutes, or until they are heated through. This method helps maintain the muffins' delightful texture and flavor.
For a quick fix, use the microwave. Place a muffin on a microwave-safe plate and cover it with a damp paper towel. Heat on medium power for 15-20 seconds. This will keep the muffin moist and soft, but be cautious not to overheat, as it can become rubbery.
If you have a toaster oven, it can be a great tool for reheating. Set it to 325°F (160°C) and place the muffins inside for about 5-7 minutes. This method gives them a slightly crispy exterior while keeping the inside soft and warm.
For a stovetop approach, slice the muffins in half and place them cut-side down on a non-stick skillet over low heat. Cover the skillet with a lid and let them warm for about 2-3 minutes. This method can give the muffins a lovely toasted edge, enhancing their flavor.
If you’re feeling adventurous, try steaming. Place the muffins in a steamer basket over simmering water for about 3-5 minutes. This method keeps them incredibly moist and is perfect if you want to preserve the muffins' tender crumb.
Essential Tools for Baking
Oven: Used to bake the muffins at the specified temperature of 375°F (190°C).
Muffin tin: Holds the muffin batter in individual portions for baking.
Paper liners: Optional, used to line the muffin tin for easy removal and cleanup.
Whisk: Used to mix the dry ingredients together and to beat the eggs.
Large bowl: Holds the dry ingredients for mixing.
Another bowl: Used to mix the wet ingredients separately before combining with the dry ingredients.
Measuring cups: Used to measure the flour, milk, and blueberries accurately.
Measuring spoons: Used to measure the baking powder, vanilla extract, and salt.
Spatula or wooden spoon: Used to stir the wet and dry ingredients together and to fold in the blueberries.
Toothpick: Used to check if the muffins are fully baked by inserting it into the center of a muffin.
Wire rack: Used to cool the muffins completely after baking.
Time-Saving Tips for Baking
Pre-measure ingredients: Measure all ingredients like whole wheat flour, baking powder, and salt in advance to streamline the process.
Use muffin liners: Skip greasing the muffin tin by using paper liners, which makes cleanup faster.
Opt for frozen blueberries: If using frozen blueberries, there's no need to thaw them, saving prep time.
Mix dry ingredients ahead: Combine dry ingredients and store in an airtight container for future use.
Batch bake: Double the recipe and freeze extra muffins for quick breakfasts or snacks.

Whole Wheat Blueberry Muffins
Ingredients
Main Ingredients
- 2 cups whole wheat flour
- 1 cup blueberries fresh or frozen
- 1 cup milk
- ½ cup honey
- ¼ cup vegetable oil
- 2 large eggs
- 2 teaspoon baking powder
- 1 teaspoon vanilla extract
- ½ teaspoon salt
Instructions
- Preheat your oven to 375°F (190°C). Grease a muffin tin or line with paper liners.
- In a large bowl, whisk together the whole wheat flour, baking powder, and salt.
- In another bowl, beat the eggs, then add the milk, honey, vegetable oil, and vanilla extract. Mix well.
- Pour the wet ingredients into the dry ingredients and stir until just combined. Do not overmix.
- Gently fold in the blueberries.
- Divide the batter evenly among the muffin cups.
- Bake for 20 minutes, or until a toothpick inserted into the center of a muffin comes out clean.
- Let the muffins cool in the tin for 5 minutes, then transfer to a wire rack to cool completely.
Nutritional Value
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